FastQCFastQC Report
Thu 31 May 2018
H2KT5AFXY_n01_AH8104A-0518.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2KT5AFXY_n01_AH8104A-0518.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7689081
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC33050.015.1617948-49
TATGCCG36150.013.73021946-47
CGTATGC41300.012.19036844-45
CCGTCTT44950.011.57054750-51
CTCGTAT41500.011.10157642-43
ATCTCGT42400.010.80991940-41
AAGGGGG28700.010.17866872-73
GCCGTCT30450.09.8270448-49
AGGGGGG24100.09.55921872-73
CCAGTCA59750.09.02236526-27
AGTCACC60250.08.63218828-29
GTATGCC37150.08.62990444-45
TGTAATC61500.08.10914736-37
ACGGGGG7206.366463E-117.916741472-73
ATGCCGT40050.07.41219746-47
TGCTTGA66850.07.35359958-59
ACCTTGT76000.07.280750832-33
TAATCTC66800.07.25244938-39
CTCCAGT79000.07.03432824-25
CTTCTGC74300.06.8400254-55
Produced by FastQC (version 0.11.5)