FastQCFastQC Report
Thu 31 May 2018
H2KT5AFXY_n01_AH7838I-0518.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2KT5AFXY_n01_AH7838I-0518.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6958440
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACGT26950.013.57008634-35
TGCCGTC28100.012.00067750-51
GAGCACA46450.011.3498739
CGTATGC31450.011.25095546-47
CCGTACG22900.011.19976632-33
AGGGGGG19200.011.13379174-75
CTCGTAT31500.010.93149844-45
ACCGTAC34550.010.9287332-33
TATGCCG33750.010.69531548-49
CACGTCT36000.010.48854514-15
GATCGGA48700.010.441541
CGTCTGA35950.010.43707616-17
AGAGCAC50450.010.2616958
CACACGT36800.010.13147112-13
AGTCACC38950.09.69416228-29
ATCTCGT35350.09.60661542-43
CCAGTCA40850.09.59207426-27
AAGGGGG25800.09.3903674-75
CGTAATC38450.09.26442938-39
GCCGTCT26150.09.08138550-51
Produced by FastQC (version 0.11.5)