FastQCFastQC Report
Thu 31 May 2018
H2KT5AFXY_n01_AH7797A-0518.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2KT5AFXY_n01_AH7797A-0518.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6284161
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG34150.020.72313146-47
TGCCGTC32400.020.66968548-49
CGTATGC35450.019.62823344-45
AAGGGGG28500.017.33315772-73
CCGTCTT41200.015.79367250-51
CTCGTAT34600.015.23725242-43
AGTCACA54150.014.77966828-29
CCAGTCA54050.014.71902126-27
ACACAGT53800.014.6992532-33
TCACACA57750.013.94058430-31
AGTGATC39700.013.81819436-37
ATCTCGT38400.012.73989440-41
CGTCTGA64500.012.3343116-17
CTCCAGT66600.012.26631224-25
CACGTCT65650.012.19059714-15
AGGGGGG25150.011.9929272-73
GCCGTCT29650.011.69386248-49
TGCTTGA60800.011.5225458-59
CACACGT68300.011.47426212-13
ACAGTGA66750.011.38492734-35
Produced by FastQC (version 0.11.5)