FastQCFastQC Report
Thu 31 May 2018
H2KT5AFXY_n01_AH6978A-0518.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2KT5AFXY_n01_AH6978A-0518.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6761346
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC29850.016.38863448-49
CGTATGC38250.013.65875244-45
TATGCCG39550.013.26983846-47
AAGGGGG29600.012.75801472-73
CTCGTAT37950.012.51520742-43
CGATGTA50100.011.94499234-35
ACCGATG53200.011.918529532-33
CCGTCTT41050.011.91727850-51
ATCTCGT42750.011.6099440-41
TCACCGA58250.010.72225430-31
AGTCACC59300.010.6525428-29
AGGGGGG23550.010.58967174-75
CCAGTCA62650.010.082931526-27
GTATCTC52300.010.08028338-39
ATGTATC59550.010.04943836-37
GCCGTCT27750.09.07122550-51
GTATGCC33200.08.29735744-45
CTCCAGT77300.08.29485724-25
TGCTTGA62300.08.27179158-59
CGTCTGA78800.07.92591416-17
Produced by FastQC (version 0.11.5)