FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n02_Trinidad9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n02_Trinidad9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2354075
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG7750.016.5483881
GTATTGG8650.016.3872831
CTAGGAC5250.015.4285723
GTGTAGG6700.014.4402991
TATTGGG9250.014.3513512
ACTGTGC5950.013.6134458
TCTAGAC4150.013.5542173
CCTACAC5500.013.53
CGTTCGT6600.013.29545411
GTCCTAC5200.012.9807681
CCTATAC8000.012.93753
GTCCTAG5050.012.9207931
TACCGTG3355.456968E-1212.7611947
GACTGCG3001.2914825E-1012.757
ACAGTGC5500.012.6818188
ACCGTGC7100.012.6760578
GGACTGC5350.012.6168226
TAGACGT1801.6950367E-512.54
TAGGAGT7400.012.4662174
ATTCGCG4000.012.37537
Produced by FastQC (version 0.11.5)