FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n02_Trinidad8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n02_Trinidad8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1502504
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAACGT1205.175234E-616.8754
TAGACAG2950.016.7796615
CTATACT6950.015.8633094
GTATAGG4600.015.6521731
TACACTG5250.015.4285725
ACAGTCC2253.0559022E-1015.0000018
GCTATAC3300.015.0000013
CTACACT5050.014.70297054
TCTATAC4450.014.6629223
TCAGGAC2408.039933E-1014.0624993
GTGTTAG2905.456968E-1213.9655181
GTCCAGG3900.013.8461531
CCTAGAC2652.4374458E-1013.5849063
GTGTATA4700.013.4042551
ACTGAGC3700.013.3783788
GGACAGT2907.2759576E-1113.1896566
CCTATAC5050.012.9207933
CTAGGCT3152.1827873E-1112.8571434
CCTGGGG2451.6178092E-812.8571423
CTAGAAC3700.012.770273
Produced by FastQC (version 0.11.5)