FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n02_Trinidad5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n02_Trinidad5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2168859
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTAGG6050.017.479341
GTATAGG6850.016.094891
CCAGGAC4950.015.03
GTGTTAC4400.014.8295451
TACACAG5850.014.6153845
ACTGAGC5250.014.1428588
GTAACGC1301.9273684E-413.8461533
TAGACTG4100.013.7195125
TATTGGG8700.013.7068962
GTCCAGG4950.013.6363631
GTCTACG4650.013.5483861
TTACACC4500.013.54
CTAGGAC4350.013.4482763
GTCCTAC3350.013.4328371
GGACCGT3350.013.4328376
ATTACAC4900.013.3163263
GTATTGG9350.013.2352931
TATACTG7950.013.0188685
GTTCTAG5200.012.9807681
ATTCGCG3303.6379788E-1212.95454637
Produced by FastQC (version 0.11.5)