FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n02_Trinidad4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n02_Trinidad4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2189674
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTACAC7300.016.3356153
GTATTGG9500.014.21052551
TACACTG6550.014.0839695
TAGACTG4050.013.8888895
TACACAG6200.013.4274195
GTCCTAG4700.013.4042551
GTGTATG8800.013.2954551
GTCTATG5250.013.2857151
GTGTAAG3800.013.0263161
GTCTTAG4150.013.0120481
CTACACT6600.012.9545454
GTGTAGG5050.012.9207911
ACTGTGC5750.012.9130438
CCTAGAC3500.012.8571433
CCTACAC4600.012.7173913
CTATGAC4250.012.7058823
GTATAGA7100.012.6760561
GGACCGT3551.8189894E-1212.6760566
ACACTGT6050.012.6446286
TACACCG4150.012.4698795
Produced by FastQC (version 0.11.5)