FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n02_Trinidad1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n02_Trinidad1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2264785
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACTG4250.016.4117665
TACACTG7200.015.05
CCTATAC7050.014.6808513
CTAGACT5100.014.1176474
GGACCGT2905.456968E-1213.9655186
TAGGCTG5300.013.5849065
TATACAG7600.013.3223695
TATACTG8000.013.2187495
GTGTAGG5500.013.0909091
CTACACT6200.013.0645164
GTCTAGA5250.012.8571431
GTATAGG7200.012.81251
CCTACAC5100.012.7941183
CTACACC7750.012.7741944
TAGGACC4250.012.7058834
TATACCG4250.012.7058835
TACCCTG3405.456968E-1212.573535
CGTATAC3405.456968E-1212.573533
GCCTAGG3601.8189894E-1212.51
GTCCTAG5450.012.3853211
Produced by FastQC (version 0.11.5)