FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n01_Trinidad9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n01_Trinidad9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2354075
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACTG4400.018.9204545
TACACCG5200.017.7403835
GTGTAGG6300.016.7857151
GTATTGG10600.016.1320761
ATTCGCG3950.015.37974637
GTATAGG8850.014.4915261
CCAGGAC6200.013.7903223
CTAGCGC3300.013.6363633
TATTGGG10500.013.52
ACAGTCC3201.8189894E-1213.3593768
CCTATAC5900.013.3474583
TTCGTGG8250.013.09090913
GTAGGAC4300.013.0813953
TACACTG7250.013.0344825
TGCGTTC7250.013.0344829
ATTGGGT10050.012.9850753
CTACACT5800.012.80172354
GTGCTAG5450.012.7981651
GCTACAC8150.012.6993863
GTGCGAA3551.8189894E-1212.67605711
Produced by FastQC (version 0.11.5)