FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n01_Trinidad8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n01_Trinidad8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1502504
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTGG7600.017.4671061
CGCTATA1551.09066605E-817.4193552
GTCGTAA1551.09066605E-817.4193551
TAGACTG2750.017.1818185
GTATAGG4650.016.9354841
TATTGGG7750.016.5483882
GGAGTGT4050.016.111116
CCCTTAC1855.6243152E-915.8108111
TCTACAC3850.015.7792223
TCGCGCG5050.015.5940639
ATTGGGT7100.014.8943653
CGTTCGT5350.014.71962511
TGCGTTC5450.014.449549
TACTGGG2509.640644E-1114.42
GTGCGTT6100.014.3852468
GGGTAAG2355.857146E-1014.3617021
GGTGCGT6150.014.2682927
CTTAGCG1453.1056043E-513.9655189
TAGACAG2752.910383E-1113.9090915
TTCGTGG6800.013.897058513
Produced by FastQC (version 0.11.5)