FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n01_Trinidad4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n01_Trinidad4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2189674
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACTG3700.015.8108115
CCAGGAC4050.015.03
GTATAGG7250.014.5862061
TAGACGG1901.333683E-714.2105265
CTAGCAC5550.014.1891893
ACCGTGT4000.014.06258
GTATTAC5050.013.811881
CCTATAC5600.013.6607153
GCACCGT4050.013.3333346
ACAGTGC6750.013.3333338
AGACAGT4100.013.17073256
TACACAG5850.013.0769225
GTCTAGC2257.392009E-813.01
GTTCTAG4700.012.9255321
GTACAGG5650.012.7433621
CTACACC7700.012.5649364
GTCCTAG4300.012.558141
GTATTGG7000.012.5357151
CTAGGAC5600.012.4553583
GTCTTAG4000.012.3751
Produced by FastQC (version 0.11.5)