FastQCFastQC Report
Thu 19 Jul 2018
000000000-BDGGG_l01_n01_Trinidad1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_n01_Trinidad1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2264785
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGTCC4000.016.3124988
GTATTGG8800.015.5965921
TATACTG7100.015.5281685
TACACTG6850.015.4379575
ATTCGCG3700.015.202702537
TATTGGG8450.015.1775142
TACACAG6400.015.11718755
TAGACAG4900.014.6938775
GTGTAGG6000.014.6251
CTACGCT2355.875336E-1014.3617024
GTATAGA5750.014.0869561
GTATAGG7350.014.0816331
CCTACAC6050.013.760333
TATACCG4350.013.44827655
CCTATAC6200.013.4274193
CTATACT8250.013.0909094
ACAGTGC6800.012.9044128
GTTCGTG7250.012.72413712
CTACACA8850.012.7118654
GTGTACG4800.012.6562511
Produced by FastQC (version 0.11.5)