FastQCFastQC Report
Tue 22 May 2018
000000000-BDGGG_l01_Trinidad9_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_Trinidad9_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2582400
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG7250.015.8275851
GTATTGG11300.014.9336291
GTGTAGG7700.014.0259731
TATTGGG11600.013.7715522
ACCGTGC9300.013.5483888
TAGGACA7700.013.149354
TTAGGAC5500.013.0909093
GAGTGTC3450.013.0434777
TGTACCG3900.012.6923085
GTCTAGC4100.012.6219521
GTCCTAC5350.012.6168221
GGACCGT3950.012.5316466
GTGTTAG6300.012.51
ATTGGGT11900.012.47899153
ACTCGCG5050.012.47524837
GTACTAA5800.012.4137941
TACACCG4900.012.397965
GTACCGT4000.012.3756
TATACTG8750.012.3428575
ACTGCGC3850.012.2727278
Produced by FastQC (version 0.11.5)