FastQCFastQC Report
Tue 22 May 2018
000000000-BDGGG_l01_Trinidad8_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_Trinidad8_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1751020
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGACTGT2150.017.7906976
GTATTGG8150.017.668711
TAGACTG2850.015.7894745
CCAGGAC4200.015.5357143
ATTCGCG3450.015.037
GCGTTCG5900.014.87288210
TATTGGG8550.014.7368412
GGCGAAC5550.014.59459445
CTAGACT3550.014.5774654
GTGCGTT6100.014.3852468
TAGACAG3300.014.3181815
ACTAGAC3300.014.3181813
TTGGGTG7100.014.2605644
ACTGTCC2853.6379788E-1214.2105268
TGCGTTC5550.014.1891899
GTAAGAC2702.1827873E-1114.1666663
GCTACAC5300.014.0094343
GTATTAG3700.013.9864861
GTATAGG5050.013.8118821
CGTTCGT6050.013.76033111
Produced by FastQC (version 0.11.5)