FastQCFastQC Report
Tue 22 May 2018
000000000-BDGGG_l01_Trinidad8_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_Trinidad8_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1751020
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTTAG2251.8189894E-1116.00000221
GACGTTA2550.015.88235320
GTATAGG5300.015.7075471
CGTTAGG2302.5465852E-1115.65217522
GTATTGG7500.015.2999991
GTCGTAA1654.2034299E-715.01
GTCTAGG3350.014.7761191
GTCCAGG3650.014.17808151
TATACTG6550.014.0839695
ACTCGCG2752.910383E-1113.90909137
TGGACTG3900.013.8461535
GTGTACG3800.013.6184211
GGACGTT3151.8189894E-1213.57142919
CTATACT6550.013.3969474
AGGACTG3400.013.2352935
GGACTGT2401.2129021E-813.1250016
CAGGACC3950.013.1012654
TACACTG5000.013.0500015
GTGTAGG5200.012.980771
GTCTAGA4000.012.93751
Produced by FastQC (version 0.11.5)