FastQCFastQC Report
Tue 22 May 2018
000000000-BDGGG_l01_Trinidad1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01_Trinidad1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2567466
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT9950.015.3768844
GTGTAAG4050.015.01
TATACTG9300.014.0322585
GTATAGG7450.013.8926181
GTGTAGG6400.013.71093751
CTACACT7700.013.4415594
GTATAAC5900.013.3474581
CTAGCGC3400.013.2352953
GTGCTAG6050.013.0165281
ACCGTGC6250.012.968
TATTGGG10350.012.8260862
CCTATAC8950.012.8212293
TCTACAC6900.012.7173923
GACAGTG6550.012.7099247
TACACTG7450.012.6845655
GTATAGA8700.012.6724141
TACACCG5900.012.5847465
TCTATAC7250.012.4137943
CCTACAC6900.012.3913053
CCAGTAC6050.012.2727273
Produced by FastQC (version 0.11.5)