[2022-04-07 06:48:47,795] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-04-07 06:48:47,795] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-04-07 06:48:47,795] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-04-07 06:48:47,796] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-04-07 06:48:47,796] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-04-07 06:48:47,796] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HYNVTDRXY/merged [2022-04-07 06:48:48,282] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-04-07 06:48:48,282] multiqc [INFO ] This is MultiQC v1.9 [2022-04-07 06:48:48,282] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HYNVTDRXY/merged [2022-04-07 06:48:48,282] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HYNVTDRXY/merged [2022-04-07 06:48:48,282] multiqc [INFO ] Template : default [2022-04-07 06:48:48,282] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-04-07 06:48:48,282] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HYNVTDRXY/merged [2022-04-07 06:48:48,283] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-04-07 06:48:48,283] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-17386929/tmphakw0o4j [2022-04-07 06:48:48,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HYNVTDRXY_1_fastqc.html [2022-04-07 06:48:48,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HYNVTDRXY_1_fastqc.html [2022-04-07 06:48:48,476] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HYNVTDRXY_3_fastqc.html [2022-04-07 06:48:48,478] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HYNVTDRXY_3_fastqc.html [2022-04-07 06:48:48,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HYNVTDRXY_2_fastqc.html [2022-04-07 06:48:48,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HYNVTDRXY_2_fastqc.html [2022-04-07 06:48:49,075] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-04-07 06:48:49,076] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-04-07 06:48:49,081] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2022-04-07 06:48:49,082] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-04-07 06:48:49,092] multiqc [DEBUG ] No samples found: conpair [2022-04-07 06:48:49,098] multiqc [DEBUG ] No samples found: peddy [2022-04-07 06:48:49,104] multiqc [DEBUG ] No samples found: somalier [2022-04-07 06:48:49,109] multiqc [DEBUG ] No samples found: methylQA [2022-04-07 06:48:49,120] multiqc [DEBUG ] No samples found: mosdepth [2022-04-07 06:48:49,126] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-04-07 06:48:49,129] multiqc [DEBUG ] No samples found: qualimap [2022-04-07 06:48:49,135] multiqc [DEBUG ] No samples found: preseq [2022-04-07 06:48:49,141] multiqc [DEBUG ] No samples found: quast [2022-04-07 06:48:49,147] multiqc [DEBUG ] No samples found: qorts [2022-04-07 06:48:49,153] multiqc [DEBUG ] No samples found: rna_seqc [2022-04-07 06:48:49,159] multiqc [DEBUG ] No samples found: rockhopper [2022-04-07 06:48:49,165] multiqc [DEBUG ] No samples found: rsem [2022-04-07 06:48:49,178] multiqc [DEBUG ] No samples found: rseqc [2022-04-07 06:48:49,184] multiqc [DEBUG ] No samples found: busco [2022-04-07 06:48:49,190] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-04-07 06:48:49,196] multiqc [DEBUG ] No samples found: disambiguate [2022-04-07 06:48:49,202] multiqc [DEBUG ] No samples found: supernova [2022-04-07 06:48:49,216] multiqc [DEBUG ] No samples found: deeptools [2022-04-07 06:48:49,222] multiqc [DEBUG ] No samples found: sargasso [2022-04-07 06:48:49,228] multiqc [DEBUG ] No samples found: verifybamid [2022-04-07 06:48:49,234] multiqc [DEBUG ] No samples found: mirtrace [2022-04-07 06:48:49,240] multiqc [DEBUG ] No samples found: happy [2022-04-07 06:48:49,246] multiqc [DEBUG ] No samples found: mirtop [2022-04-07 06:48:49,253] multiqc [DEBUG ] No samples found: homer [2022-04-07 06:48:49,259] multiqc [DEBUG ] No samples found: macs2 [2022-04-07 06:48:49,265] multiqc [DEBUG ] No samples found: theta2 [2022-04-07 06:48:49,269] multiqc [DEBUG ] No samples found: snpeff [2022-04-07 06:48:49,278] multiqc [DEBUG ] No samples found: gatk [2022-04-07 06:48:49,284] multiqc [DEBUG ] No samples found: htseq [2022-04-07 06:48:49,291] multiqc [DEBUG ] No samples found: bcftools [2022-04-07 06:48:49,297] multiqc [DEBUG ] No samples found: featureCounts [2022-04-07 06:48:49,304] multiqc [DEBUG ] No samples found: fgbio [2022-04-07 06:48:49,320] multiqc [DEBUG ] No samples found: dragen [2022-04-07 06:48:49,326] multiqc [DEBUG ] No samples found: dedup [2022-04-07 06:48:49,332] multiqc [DEBUG ] No samples found: damageprofiler [2022-04-07 06:48:49,364] multiqc [DEBUG ] No samples found: biobambam2 [2022-04-07 06:48:49,371] multiqc [DEBUG ] No samples found: mtnucratio [2022-04-07 06:48:49,373] multiqc [DEBUG ] No samples found: picard [2022-04-07 06:48:49,379] multiqc [DEBUG ] No samples found: prokka [2022-04-07 06:48:49,385] multiqc [DEBUG ] No samples found: samblaster [2022-04-07 06:48:49,395] multiqc [DEBUG ] No samples found: samtools [2022-04-07 06:48:49,401] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-04-07 06:48:49,408] multiqc [DEBUG ] No samples found: bamtools [2022-04-07 06:48:49,414] multiqc [DEBUG ] No samples found: jellyfish [2022-04-07 06:48:49,425] multiqc [DEBUG ] No samples found: vcftools [2022-04-07 06:48:49,431] multiqc [DEBUG ] No samples found: longranger [2022-04-07 06:48:49,437] multiqc [DEBUG ] No samples found: stacks [2022-04-07 06:48:49,443] multiqc [DEBUG ] No samples found: varscan2 [2022-04-07 06:48:49,458] multiqc [DEBUG ] No samples found: bbmap [2022-04-07 06:48:49,464] multiqc [DEBUG ] No samples found: bismark [2022-04-07 06:48:49,470] multiqc [DEBUG ] No samples found: biscuit [2022-04-07 06:48:49,476] multiqc [DEBUG ] No samples found: hicexplorer [2022-04-07 06:48:49,482] multiqc [DEBUG ] No samples found: hicup [2022-04-07 06:48:49,488] multiqc [DEBUG ] No samples found: hicpro [2022-04-07 06:48:49,494] multiqc [DEBUG ] No samples found: salmon [2022-04-07 06:48:49,500] multiqc [DEBUG ] No samples found: kallisto [2022-04-07 06:48:49,506] multiqc [DEBUG ] No samples found: slamdunk [2022-04-07 06:48:49,512] multiqc [DEBUG ] No samples found: star [2022-04-07 06:48:49,518] multiqc [DEBUG ] No samples found: hisat2 [2022-04-07 06:48:49,524] multiqc [DEBUG ] No samples found: tophat [2022-04-07 06:48:49,530] multiqc [DEBUG ] No samples found: bowtie2 [2022-04-07 06:48:49,536] multiqc [DEBUG ] No samples found: bowtie1 [2022-04-07 06:48:49,542] multiqc [DEBUG ] No samples found: snpsplit [2022-04-07 06:48:49,548] multiqc [DEBUG ] No samples found: kat [2022-04-07 06:48:49,554] multiqc [DEBUG ] No samples found: leehom [2022-04-07 06:48:49,560] multiqc [DEBUG ] No samples found: adapterRemoval [2022-04-07 06:48:49,566] multiqc [DEBUG ] No samples found: clipandmerge [2022-04-07 06:48:49,572] multiqc [DEBUG ] No samples found: cutadapt [2022-04-07 06:48:49,578] multiqc [DEBUG ] No samples found: flexbar [2022-04-07 06:48:49,584] multiqc [DEBUG ] No samples found: kaiju [2022-04-07 06:48:49,589] multiqc [DEBUG ] No samples found: kraken [2022-04-07 06:48:49,595] multiqc [DEBUG ] No samples found: malt [2022-04-07 06:48:49,601] multiqc [DEBUG ] No samples found: trimmomatic [2022-04-07 06:48:49,607] multiqc [DEBUG ] No samples found: sickle [2022-04-07 06:48:49,613] multiqc [DEBUG ] No samples found: skewer [2022-04-07 06:48:49,619] multiqc [DEBUG ] No samples found: sortmerna [2022-04-07 06:48:49,624] multiqc [DEBUG ] No samples found: biobloomtools [2022-04-07 06:48:49,629] multiqc [DEBUG ] No samples found: fastq_screen [2022-04-07 06:48:49,635] multiqc [DEBUG ] No samples found: afterqc [2022-04-07 06:48:49,644] multiqc [DEBUG ] No samples found: fastp [2022-04-07 06:48:49,785] multiqc.modules.fastqc.fastqc [INFO ] Found 3 reports [2022-04-07 06:48:49,839] multiqc [DEBUG ] No samples found: pycoqc [2022-04-07 06:48:49,844] multiqc [DEBUG ] No samples found: minionqc [2022-04-07 06:48:49,849] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-04-07 06:48:49,855] multiqc [DEBUG ] No samples found: clusterflow [2022-04-07 06:48:49,860] multiqc [DEBUG ] No samples found: bcl2fastq [2022-04-07 06:48:49,867] multiqc [DEBUG ] No samples found: interop [2022-04-07 06:48:49,872] multiqc [DEBUG ] No samples found: ivar [2022-04-07 06:48:49,879] multiqc [DEBUG ] No samples found: flash [2022-04-07 06:48:49,884] multiqc [DEBUG ] No samples found: seqyclean [2022-04-07 06:48:49,884] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2022-04-07 06:48:49,884] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-04-07 06:48:49,884] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-04-07 06:48:49,888] multiqc [INFO ] Compressing plot data [2022-04-07 06:48:49,942] multiqc [INFO ] Report : multiqc_report.html [2022-04-07 06:48:49,942] multiqc [INFO ] Data : multiqc_data [2022-04-07 06:48:49,942] multiqc [DEBUG ] Moving data file from '/state/partition1/job-17386929/tmphakw0o4j/multiqc_data' to '/scratch/gencore/logs/html/HYNVTDRXY/merged/multiqc_data' [2022-04-07 06:48:50,100] multiqc [INFO ] MultiQC complete