FastQCFastQC Report
Tue 18 Jun 2019
HYN2CBCX2_l02.2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHYN2CBCX2_l02.2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151168675
Sequences flagged as poor quality0
Sequence length6
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNN14868472598.35683550179957No Hit
NNNNNA9824330.6498919170919504No Hit
NNNNNG6374640.4216905387309904No Hit
NNNNNT4660410.3082920452931138No Hit
NNNNNC3980120.2632899970843827No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)