FastQCFastQC Report
Fri 7 Jun 2024
HYK33DRX3_n01_Col-0_rep2_Mock.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHYK33DRX3_n01_Col-0_rep2_Mock.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21123019
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAA317250.15019159903231635No Hit
GTCGTCATTAAAGTTAGTTCTTCCTCCCACGAGATGAGATCCAATATTCT296450.14034452177503604No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT228930.10837939406294149No Hit
GTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCT226070.10702542094006542No Hit
CTCCCACGAGATGAGATCCAATATTCTCAGATAATCTTCTCCAATCATGC217250.10284988144923793No Hit
CCTCTCTCTTCACAGGCTCACCCTCACAGAAAATCTCTGTGTCTGGAGCA216830.10265104623538898No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)