FastQCFastQC Report
Fri 7 Jun 2024
HYK33DRX3_n01_Col-0_rep1_Mock.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHYK33DRX3_n01_Col-0_rep1_Mock.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19824670
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTCTCTTCACAGGCTCACCCTCACAGAAAATCTCTGTGTCTGGAGCA381910.19264381197770253No Hit
GTCGTCATTAAAGTTAGTTCTTCCTCCCACGAGATGAGATCCAATATTCT346210.17463594602079127No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT268520.13544739962884628No Hit
CTCCCACGAGATGAGATCCAATATTCTCAGATAATCTTCTCCAATCATGC261490.13190131285918No Hit
GGCCTCTGTGCACAAAGCTGCAAGATCAGCACCGACGTAACCGTGTGTGT260080.13119007781718436No Hit
CCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAA242400.12227189658138068No Hit
CCTCCCACGAGATGAGATCCAATATTCTCAGATAATCTTCTCCAATCATG224430.11320743296105308No Hit
CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGG222010.11198673168330167No Hit
GTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCT205680.10374952016855767No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)