HYJKMBGXY_n01_4s-50.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HYJKMBGXY_n01_4s-50.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13335811
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	18847	0.14132623805181402	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	16450	0.12335207810008704	TruSeq Adapter, Index 19 (97% over 40bp)
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGC	15670	0.11750316497436863	No Hit
CTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCG	14756	0.11064943856807809	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	14323	0.10740254192264723	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	2915	46.035427	44
TGAAACG	3250	44.897633	35
GTCACGT	3255	44.618217	29
TCGTATG	3260	44.232323	45
ACGTCTG	3665	42.731518	15
CACGTGA	3435	42.380726	31
TCACGTG	3565	40.73822	30
TATGCCG	3580	40.2789	48
AGTCACG	3710	38.77409	28
GAAACGA	3725	38.709106	36
CGTATGC	3805	38.25961	46
CACGTCT	4245	37.217262	14
ACACGTC	4355	36.435497	13
GTATGCC	4285	34.21508	47
CAGTCAC	4380	33.472973	27
ATGCCGT	4665	31.280691	49
TGTTACC	3825	30.84251	13
GTCTGAA	5245	30.254173	17
TTACCTC	4100	28.438015	15
TCTAGTT	4755	27.930367	7