FastQCFastQC Report
Wed 7 Mar 2018
HYJGYAFXX_n01_ah7797-rec8-0318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHYJGYAFXX_n01_ah7797-rec8-0318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7371705
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGCC25150.017.66002330-31
GTCACGC21900.017.4908528-29
TGCCGTC27450.016.6082548-49
AGGGGGG20650.016.38728372-73
AGTCACG27250.016.29906728-29
TATGCCG28750.015.77552946-47
CGTATGC29400.015.74647644-45
GCCGTCT23950.015.50301248-49
GAGCACA50750.015.373289
GATCGGA49500.015.1039221
AGAGCAC51950.015.0181698
CACGCCA26600.014.40036130-31
AAGGGGG26100.013.50564172-73
TCGGAAG58450.012.8660343
CACACGT35500.012.77595712-13
CCGTCTT36250.012.51162750-51
CTCGTAT35100.012.45289442-43
CACGTCT37550.012.01588514-15
GTATGCC32850.011.94663444-45
CGTCTGA38500.011.84150616-17
Produced by FastQC (version 0.11.2)