FastQCFastQC Report
Thu 19 Jul 2018
HY7YMBGX5_n01_dam_gr_r3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHY7YMBGX5_n01_dam_gr_r3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16012984
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAATAC573950.063.949871
GGATCCG174600.063.7420113
AGGATCA2142250.063.67291612
GAGGATC6353300.063.6025811
GGATCCA638350.063.5594113
AGGATCG401900.063.53391612
TAATACG572150.063.5280082
GGATCAT805950.063.4127913
GGATCAC328950.063.37829613
AGGATCT2341650.063.36984612
AGGATCC1483200.063.34592412
CGAGGAT6387050.063.3228910
GGATCTT971700.063.30393213
CGGCCGA6413500.063.231036
GGATCAA768600.063.17028413
GGATCTC595900.063.16549313
GGATCTA401950.063.15220313
CCGAGGA6416750.063.0837949
GGTCGCG6403300.063.0782281
GCGGCCG6427100.063.069315
Produced by FastQC (version 0.11.2)