FastQCFastQC Report
Thu 19 Jul 2018
HY7YMBGX5_n01_dam_gr_bzip1_r1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHY7YMBGX5_n01_dam_gr_bzip1_r1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19272421
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG267280.13868522278545076No Hit
GGTCGCGGCCGAGGATCAAGTTCACCACCGCATGTCGGTACGCTCCAGGC229800.11923774392433623No Hit
GGTCGCGGCCGAGGATCCATGCTTTCCAACGAAGCACGCCCATCCAACCT209680.10879795537882865No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGATC7560050.064.5287611
AGGATCT2579600.064.4872512
AGGATCG592850.064.4109712
GGATCTC673300.064.38222513
AGGATCA2593500.064.33594512
CGAGGAT7605200.064.20344510
CGGCCGA7646900.064.1167766
GGATCCA774400.064.1073113
AGGATCC1821850.064.0423212
GCGGCCG7657050.064.006075
GGATCTT995950.063.99056213
GGATCAT916750.063.97566213
CGCGGCC7656750.063.9505164
GGTCGCG7637550.063.943331
CCGAGGA7649950.063.9376759
GGCCGAG7676400.063.883157
GCCGAGG7678650.063.8649338
GGATCGG110900.063.77908313
GGATCTA465650.063.77283513
GGATCTG465200.063.76681513
Produced by FastQC (version 0.11.2)