FastQCFastQC Report
Fri 28 Jul 2017
HY7YJBGX2_n01_arr1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHY7YJBGX2_n01_arr1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96416459
Sequences flagged as poor quality0
Sequence length75
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGGG320450.023.45816421
TACGGGG223100.023.13301522
AGTACGG335000.022.40856720
CGCAGAG634950.020.84736415
AGAGTAC640000.020.71522718
GAGTACG411650.018.65504819
ACGCAGA716550.018.49269914
GCAGTGG736000.018.4214272
GAGTACT428600.018.39221420
AGTGGTA741700.018.1636034
GTGGTAT749150.017.8725435
AACGCAG766800.017.24473413
CAGAGTA776700.017.19819817
AGCAGTG791000.016.9894451
TCAACGC784300.016.90402811
GCAGAGT801950.016.61361316
GGTATCA826100.016.4579947
TGGTATC827100.016.2423616
TCCGATC331150.016.2104876
GTATCAA863300.015.6250238
Produced by FastQC (version 0.11.2)