[2022-03-29 08:15:43,698] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2022-03-29 08:15:43,698] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2022-03-29 08:15:43,698] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2022-03-29 08:15:43,699] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2022-03-29 08:15:43,699] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2022-03-29 08:15:43,700] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HY2C2DRXY/merged
[2022-03-29 08:15:44,289] multiqc [WARNING] MultiQC Version v1.12 now available!
[2022-03-29 08:15:44,289] multiqc [INFO ] This is MultiQC v1.9
[2022-03-29 08:15:44,290] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HY2C2DRXY/merged
[2022-03-29 08:15:44,290] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HY2C2DRXY/merged
[2022-03-29 08:15:44,290] multiqc [INFO ] Template : default
[2022-03-29 08:15:44,290] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2022-03-29 08:15:44,290] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HY2C2DRXY/merged
[2022-03-29 08:15:44,290] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2022-03-29 08:15:44,290] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-16762067/tmp6qwhrl8u
[2022-03-29 08:15:44,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HY2C2DRXY_2_fastqc.html
[2022-03-29 08:15:44,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HY2C2DRXY_2_fastqc.html
[2022-03-29 08:15:44,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HY2C2DRXY_3_fastqc.html
[2022-03-29 08:15:44,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HY2C2DRXY_3_fastqc.html
[2022-03-29 08:15:44,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HY2C2DRXY_4_fastqc.html
[2022-03-29 08:15:44,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HY2C2DRXY_4_fastqc.html
[2022-03-29 08:15:44,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HY2C2DRXY_1_fastqc.html
[2022-03-29 08:15:44,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HY2C2DRXY_1_fastqc.html
[2022-03-29 08:15:45,071] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2022-03-29 08:15:45,072] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2022-03-29 08:15:45,077] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt
[2022-03-29 08:15:45,078] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2022-03-29 08:15:45,083] multiqc [DEBUG ] No samples found: conpair
[2022-03-29 08:15:45,088] multiqc [DEBUG ] No samples found: peddy
[2022-03-29 08:15:45,093] multiqc [DEBUG ] No samples found: somalier
[2022-03-29 08:15:45,097] multiqc [DEBUG ] No samples found: methylQA
[2022-03-29 08:15:45,105] multiqc [DEBUG ] No samples found: mosdepth
[2022-03-29 08:15:45,109] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2022-03-29 08:15:45,113] multiqc [DEBUG ] No samples found: qualimap
[2022-03-29 08:15:45,117] multiqc [DEBUG ] No samples found: preseq
[2022-03-29 08:15:45,121] multiqc [DEBUG ] No samples found: quast
[2022-03-29 08:15:45,126] multiqc [DEBUG ] No samples found: qorts
[2022-03-29 08:15:45,131] multiqc [DEBUG ] No samples found: rna_seqc
[2022-03-29 08:15:45,135] multiqc [DEBUG ] No samples found: rockhopper
[2022-03-29 08:15:45,139] multiqc [DEBUG ] No samples found: rsem
[2022-03-29 08:15:45,150] multiqc [DEBUG ] No samples found: rseqc
[2022-03-29 08:15:45,154] multiqc [DEBUG ] No samples found: busco
[2022-03-29 08:15:45,158] multiqc [DEBUG ] No samples found: goleft_indexcov
[2022-03-29 08:15:45,163] multiqc [DEBUG ] No samples found: disambiguate
[2022-03-29 08:15:45,167] multiqc [DEBUG ] No samples found: supernova
[2022-03-29 08:15:45,179] multiqc [DEBUG ] No samples found: deeptools
[2022-03-29 08:15:45,184] multiqc [DEBUG ] No samples found: sargasso
[2022-03-29 08:15:45,188] multiqc [DEBUG ] No samples found: verifybamid
[2022-03-29 08:15:45,193] multiqc [DEBUG ] No samples found: mirtrace
[2022-03-29 08:15:45,198] multiqc [DEBUG ] No samples found: happy
[2022-03-29 08:15:45,203] multiqc [DEBUG ] No samples found: mirtop
[2022-03-29 08:15:45,209] multiqc [DEBUG ] No samples found: homer
[2022-03-29 08:15:45,214] multiqc [DEBUG ] No samples found: macs2
[2022-03-29 08:15:45,218] multiqc [DEBUG ] No samples found: theta2
[2022-03-29 08:15:45,222] multiqc [DEBUG ] No samples found: snpeff
[2022-03-29 08:15:45,229] multiqc [DEBUG ] No samples found: gatk
[2022-03-29 08:15:45,233] multiqc [DEBUG ] No samples found: htseq
[2022-03-29 08:15:45,238] multiqc [DEBUG ] No samples found: bcftools
[2022-03-29 08:15:45,243] multiqc [DEBUG ] No samples found: featureCounts
[2022-03-29 08:15:45,248] multiqc [DEBUG ] No samples found: fgbio
[2022-03-29 08:15:45,261] multiqc [DEBUG ] No samples found: dragen
[2022-03-29 08:15:45,266] multiqc [DEBUG ] No samples found: dedup
[2022-03-29 08:15:45,270] multiqc [DEBUG ] No samples found: damageprofiler
[2022-03-29 08:15:45,291] multiqc [DEBUG ] No samples found: biobambam2
[2022-03-29 08:15:45,297] multiqc [DEBUG ] No samples found: mtnucratio
[2022-03-29 08:15:45,299] multiqc [DEBUG ] No samples found: picard
[2022-03-29 08:15:45,304] multiqc [DEBUG ] No samples found: prokka
[2022-03-29 08:15:45,308] multiqc [DEBUG ] No samples found: samblaster
[2022-03-29 08:15:45,316] multiqc [DEBUG ] No samples found: samtools
[2022-03-29 08:15:45,320] multiqc [DEBUG ] No samples found: sexdeterrmine
[2022-03-29 08:15:45,326] multiqc [DEBUG ] No samples found: bamtools
[2022-03-29 08:15:45,331] multiqc [DEBUG ] No samples found: jellyfish
[2022-03-29 08:15:45,338] multiqc [DEBUG ] No samples found: vcftools
[2022-03-29 08:15:45,343] multiqc [DEBUG ] No samples found: longranger
[2022-03-29 08:15:45,347] multiqc [DEBUG ] No samples found: stacks
[2022-03-29 08:15:45,352] multiqc [DEBUG ] No samples found: varscan2
[2022-03-29 08:15:45,365] multiqc [DEBUG ] No samples found: bbmap
[2022-03-29 08:15:45,370] multiqc [DEBUG ] No samples found: bismark
[2022-03-29 08:15:45,375] multiqc [DEBUG ] No samples found: biscuit
[2022-03-29 08:15:45,379] multiqc [DEBUG ] No samples found: hicexplorer
[2022-03-29 08:15:45,384] multiqc [DEBUG ] No samples found: hicup
[2022-03-29 08:15:45,388] multiqc [DEBUG ] No samples found: hicpro
[2022-03-29 08:15:45,393] multiqc [DEBUG ] No samples found: salmon
[2022-03-29 08:15:45,397] multiqc [DEBUG ] No samples found: kallisto
[2022-03-29 08:15:45,402] multiqc [DEBUG ] No samples found: slamdunk
[2022-03-29 08:15:45,407] multiqc [DEBUG ] No samples found: star
[2022-03-29 08:15:45,411] multiqc [DEBUG ] No samples found: hisat2
[2022-03-29 08:15:45,416] multiqc [DEBUG ] No samples found: tophat
[2022-03-29 08:15:45,421] multiqc [DEBUG ] No samples found: bowtie2
[2022-03-29 08:15:45,425] multiqc [DEBUG ] No samples found: bowtie1
[2022-03-29 08:15:45,429] multiqc [DEBUG ] No samples found: snpsplit
[2022-03-29 08:15:45,434] multiqc [DEBUG ] No samples found: kat
[2022-03-29 08:15:45,438] multiqc [DEBUG ] No samples found: leehom
[2022-03-29 08:15:45,442] multiqc [DEBUG ] No samples found: adapterRemoval
[2022-03-29 08:15:45,447] multiqc [DEBUG ] No samples found: clipandmerge
[2022-03-29 08:15:45,452] multiqc [DEBUG ] No samples found: cutadapt
[2022-03-29 08:15:45,456] multiqc [DEBUG ] No samples found: flexbar
[2022-03-29 08:15:45,460] multiqc [DEBUG ] No samples found: kaiju
[2022-03-29 08:15:45,465] multiqc [DEBUG ] No samples found: kraken
[2022-03-29 08:15:45,469] multiqc [DEBUG ] No samples found: malt
[2022-03-29 08:15:45,474] multiqc [DEBUG ] No samples found: trimmomatic
[2022-03-29 08:15:45,479] multiqc [DEBUG ] No samples found: sickle
[2022-03-29 08:15:45,483] multiqc [DEBUG ] No samples found: skewer
[2022-03-29 08:15:45,487] multiqc [DEBUG ] No samples found: sortmerna
[2022-03-29 08:15:45,491] multiqc [DEBUG ] No samples found: biobloomtools
[2022-03-29 08:15:45,496] multiqc [DEBUG ] No samples found: fastq_screen
[2022-03-29 08:15:45,500] multiqc [DEBUG ] No samples found: afterqc
[2022-03-29 08:15:45,505] multiqc [DEBUG ] No samples found: fastp
[2022-03-29 08:15:45,664] multiqc.modules.fastqc.fastqc [INFO ] Found 4 reports
[2022-03-29 08:15:45,710] multiqc [DEBUG ] No samples found: pycoqc
[2022-03-29 08:15:45,715] multiqc [DEBUG ] No samples found: minionqc
[2022-03-29 08:15:45,719] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2022-03-29 08:15:45,723] multiqc [DEBUG ] No samples found: clusterflow
[2022-03-29 08:15:45,728] multiqc [DEBUG ] No samples found: bcl2fastq
[2022-03-29 08:15:45,734] multiqc [DEBUG ] No samples found: interop
[2022-03-29 08:15:45,739] multiqc [DEBUG ] No samples found: ivar
[2022-03-29 08:15:45,743] multiqc [DEBUG ] No samples found: flash
[2022-03-29 08:15:45,748] multiqc [DEBUG ] No samples found: seqyclean
[2022-03-29 08:15:45,748] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found.
[2022-03-29 08:15:45,748] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2022-03-29 08:15:45,748] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2022-03-29 08:15:45,754] multiqc [INFO ] Compressing plot data
[2022-03-29 08:15:45,819] multiqc [INFO ] Report : multiqc_report.html
[2022-03-29 08:15:45,819] multiqc [INFO ] Data : multiqc_data
[2022-03-29 08:15:45,819] multiqc [DEBUG ] Moving data file from '/state/partition1/job-16762067/tmp6qwhrl8u/multiqc_data' to '/scratch/gencore/logs/html/HY2C2DRXY/merged/multiqc_data'
[2022-03-29 08:15:45,942] multiqc [INFO ] MultiQC complete