FastQCFastQC Report
Tue 29 Mar 2022
HY2C2DRXY_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHY2C2DRXY_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences896493449
Sequences flagged as poor quality0
Sequence length10
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGATCAAA35393826039.48029518729924No Hit
GTAACATGCG24864328027.73509168163481No Hit
CTCTAGCGAG12609047314.064851577069359No Hit
CACTACGAAA11654012812.99955154496617No Hit
GGGGGGGGGG222877322.48610093301418No Hit
GTAAAAAAAA15099950.16843346727009936No Hit
GGGATCAAAA12162590.1356684760336715No Hit
GTGATCAAAA10596690.11820153300417481No Hit
CACTAACAAA9850630.10987955362069801No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)