[2021-06-17 11:44:56,012] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-06-17 11:44:56,012] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-06-17 11:44:56,012] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-06-17 11:44:56,013] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-06-17 11:44:56,013] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-06-17 11:44:56,013] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HY22JDRXX/merged [2021-06-17 11:44:57,366] multiqc [WARNING] MultiQC Version v1.10.1 now available! [2021-06-17 11:44:57,366] multiqc [INFO ] This is MultiQC v1.9 [2021-06-17 11:44:57,366] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HY22JDRXX/merged [2021-06-17 11:44:57,366] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HY22JDRXX/merged [2021-06-17 11:44:57,366] multiqc [INFO ] Template : default [2021-06-17 11:44:57,366] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-06-17 11:44:57,366] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HY22JDRXX/merged [2021-06-17 11:44:57,367] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-06-17 11:44:57,367] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-7709681/tmp57bsah_4 [2021-06-17 11:44:57,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HY22JDRXX_3_fastqc.html [2021-06-17 11:44:57,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HY22JDRXX_3_fastqc.html [2021-06-17 11:44:57,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HY22JDRXX_1_fastqc.html [2021-06-17 11:44:57,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HY22JDRXX_1_fastqc.html [2021-06-17 11:44:57,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HY22JDRXX_2_fastqc.html [2021-06-17 11:44:57,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HY22JDRXX_2_fastqc.html [2021-06-17 11:44:58,042] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-06-17 11:44:58,043] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-06-17 11:44:58,047] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2021-06-17 11:44:58,049] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-06-17 11:44:58,053] multiqc [DEBUG ] No samples found: conpair [2021-06-17 11:44:58,058] multiqc [DEBUG ] No samples found: peddy [2021-06-17 11:44:58,066] multiqc [DEBUG ] No samples found: somalier [2021-06-17 11:44:58,070] multiqc [DEBUG ] No samples found: methylQA [2021-06-17 11:44:58,077] multiqc [DEBUG ] No samples found: mosdepth [2021-06-17 11:44:58,081] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-06-17 11:44:58,085] multiqc [DEBUG ] No samples found: qualimap [2021-06-17 11:44:58,089] multiqc [DEBUG ] No samples found: preseq [2021-06-17 11:44:58,094] multiqc [DEBUG ] No samples found: quast [2021-06-17 11:44:58,098] multiqc [DEBUG ] No samples found: qorts [2021-06-17 11:44:58,103] multiqc [DEBUG ] No samples found: rna_seqc [2021-06-17 11:44:58,107] multiqc [DEBUG ] No samples found: rockhopper [2021-06-17 11:44:58,112] multiqc [DEBUG ] No samples found: rsem [2021-06-17 11:44:58,122] multiqc [DEBUG ] No samples found: rseqc [2021-06-17 11:44:58,126] multiqc [DEBUG ] No samples found: busco [2021-06-17 11:44:58,130] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-06-17 11:44:58,134] multiqc [DEBUG ] No samples found: disambiguate [2021-06-17 11:44:58,139] multiqc [DEBUG ] No samples found: supernova [2021-06-17 11:44:58,151] multiqc [DEBUG ] No samples found: deeptools [2021-06-17 11:44:58,155] multiqc [DEBUG ] No samples found: sargasso [2021-06-17 11:44:58,160] multiqc [DEBUG ] No samples found: verifybamid [2021-06-17 11:44:58,164] multiqc [DEBUG ] No samples found: mirtrace [2021-06-17 11:44:58,169] multiqc [DEBUG ] No samples found: happy [2021-06-17 11:44:58,173] multiqc [DEBUG ] No samples found: mirtop [2021-06-17 11:44:58,179] multiqc [DEBUG ] No samples found: homer [2021-06-17 11:44:58,183] multiqc [DEBUG ] No samples found: macs2 [2021-06-17 11:44:58,187] multiqc [DEBUG ] No samples found: theta2 [2021-06-17 11:44:58,191] multiqc [DEBUG ] No samples found: snpeff [2021-06-17 11:44:58,198] multiqc [DEBUG ] No samples found: gatk [2021-06-17 11:44:58,202] multiqc [DEBUG ] No samples found: htseq [2021-06-17 11:44:58,207] multiqc [DEBUG ] No samples found: bcftools [2021-06-17 11:44:58,211] multiqc [DEBUG ] No samples found: featureCounts [2021-06-17 11:44:58,216] multiqc [DEBUG ] No samples found: fgbio [2021-06-17 11:44:58,230] multiqc [DEBUG ] No samples found: dragen [2021-06-17 11:44:58,234] multiqc [DEBUG ] No samples found: dedup [2021-06-17 11:44:58,238] multiqc [DEBUG ] No samples found: damageprofiler [2021-06-17 11:44:58,259] multiqc [DEBUG ] No samples found: biobambam2 [2021-06-17 11:44:58,264] multiqc [DEBUG ] No samples found: mtnucratio [2021-06-17 11:44:58,266] multiqc [DEBUG ] No samples found: picard [2021-06-17 11:44:58,271] multiqc [DEBUG ] No samples found: prokka [2021-06-17 11:44:58,275] multiqc [DEBUG ] No samples found: samblaster [2021-06-17 11:44:58,288] multiqc [DEBUG ] No samples found: samtools [2021-06-17 11:44:58,293] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-06-17 11:44:58,298] multiqc [DEBUG ] No samples found: bamtools [2021-06-17 11:44:58,302] multiqc [DEBUG ] No samples found: jellyfish [2021-06-17 11:44:58,310] multiqc [DEBUG ] No samples found: vcftools [2021-06-17 11:44:58,315] multiqc [DEBUG ] No samples found: longranger [2021-06-17 11:44:58,319] multiqc [DEBUG ] No samples found: stacks [2021-06-17 11:44:58,324] multiqc [DEBUG ] No samples found: varscan2 [2021-06-17 11:44:58,337] multiqc [DEBUG ] No samples found: bbmap [2021-06-17 11:44:58,342] multiqc [DEBUG ] No samples found: bismark [2021-06-17 11:44:58,347] multiqc [DEBUG ] No samples found: biscuit [2021-06-17 11:44:58,352] multiqc [DEBUG ] No samples found: hicexplorer [2021-06-17 11:44:58,356] multiqc [DEBUG ] No samples found: hicup [2021-06-17 11:44:58,361] multiqc [DEBUG ] No samples found: hicpro [2021-06-17 11:44:58,365] multiqc [DEBUG ] No samples found: salmon [2021-06-17 11:44:58,369] multiqc [DEBUG ] No samples found: kallisto [2021-06-17 11:44:58,374] multiqc [DEBUG ] No samples found: slamdunk [2021-06-17 11:44:58,379] multiqc [DEBUG ] No samples found: star [2021-06-17 11:44:58,383] multiqc [DEBUG ] No samples found: hisat2 [2021-06-17 11:44:58,388] multiqc [DEBUG ] No samples found: tophat [2021-06-17 11:44:58,392] multiqc [DEBUG ] No samples found: bowtie2 [2021-06-17 11:44:58,397] multiqc [DEBUG ] No samples found: bowtie1 [2021-06-17 11:44:58,401] multiqc [DEBUG ] No samples found: snpsplit [2021-06-17 11:44:58,405] multiqc [DEBUG ] No samples found: kat [2021-06-17 11:44:58,409] multiqc [DEBUG ] No samples found: leehom [2021-06-17 11:44:58,414] multiqc [DEBUG ] No samples found: adapterRemoval [2021-06-17 11:44:58,418] multiqc [DEBUG ] No samples found: clipandmerge [2021-06-17 11:44:58,423] multiqc [DEBUG ] No samples found: cutadapt [2021-06-17 11:44:58,427] multiqc [DEBUG ] No samples found: flexbar [2021-06-17 11:44:58,432] multiqc [DEBUG ] No samples found: kaiju [2021-06-17 11:44:58,436] multiqc [DEBUG ] No samples found: kraken [2021-06-17 11:44:58,441] multiqc [DEBUG ] No samples found: malt [2021-06-17 11:44:58,445] multiqc [DEBUG ] No samples found: trimmomatic [2021-06-17 11:44:58,450] multiqc [DEBUG ] No samples found: sickle [2021-06-17 11:44:58,454] multiqc [DEBUG ] No samples found: skewer [2021-06-17 11:44:58,458] multiqc [DEBUG ] No samples found: sortmerna [2021-06-17 11:44:58,462] multiqc [DEBUG ] No samples found: biobloomtools [2021-06-17 11:44:58,467] multiqc [DEBUG ] No samples found: fastq_screen [2021-06-17 11:44:58,471] multiqc [DEBUG ] No samples found: afterqc [2021-06-17 11:44:58,476] multiqc [DEBUG ] No samples found: fastp [2021-06-17 11:44:58,684] multiqc.modules.fastqc.fastqc [INFO ] Found 3 reports [2021-06-17 11:44:58,731] multiqc [DEBUG ] No samples found: pycoqc [2021-06-17 11:44:58,735] multiqc [DEBUG ] No samples found: minionqc [2021-06-17 11:44:58,740] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-06-17 11:44:58,744] multiqc [DEBUG ] No samples found: clusterflow [2021-06-17 11:44:58,749] multiqc [DEBUG ] No samples found: bcl2fastq [2021-06-17 11:44:58,754] multiqc [DEBUG ] No samples found: interop [2021-06-17 11:44:58,758] multiqc [DEBUG ] No samples found: ivar [2021-06-17 11:44:58,763] multiqc [DEBUG ] No samples found: flash [2021-06-17 11:44:58,767] multiqc [DEBUG ] No samples found: seqyclean [2021-06-17 11:44:58,767] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2021-06-17 11:44:58,767] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-06-17 11:44:58,767] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-06-17 11:44:58,771] multiqc [INFO ] Compressing plot data [2021-06-17 11:44:58,825] multiqc [INFO ] Report : multiqc_report.html [2021-06-17 11:44:58,825] multiqc [INFO ] Data : multiqc_data [2021-06-17 11:44:58,825] multiqc [DEBUG ] Moving data file from '/state/partition1/job-7709681/tmp57bsah_4/multiqc_data' to '/scratch/gencore/logs/html/HY22JDRXX/merged/multiqc_data' [2021-06-17 11:44:58,953] multiqc [INFO ] MultiQC complete