FastQCFastQC Report
Thu 17 Jun 2021
HY22JDRXX_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHY22JDRXX_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1958095766
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC28576890514.594225163142504No Hit
CGTCCCGT27006456613.792204175574527No Hit
GATGCCAA25559762813.053377288187242No Hit
CTCCTAGT24385712812.453789658007972No Hit
ACAAGGTA21651076811.05721036526668No Hit
TACTATAG19928642110.177562530922708No Hit
AGGTATTG1803177429.208831617482799No Hit
GTGGTACC1796735139.175930826255614No Hit
GGGGGGGG643759683.2876823042984915No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)