FastQCFastQC Report
Fri 1 Mar 2024
HWW5MDRX3_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWW5MDRX3_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1907118255
Sequences flagged as poor quality0
Sequence length10
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACGCGTGA39685563020.809177876596856No Hit
CGGAACCCAA37185107619.498060753448136No Hit
CGAAGTATAC35047829518.377376131822512No Hit
AAGTGGAGAG29879318415.66726044473839No Hit
TCCCAAGGGT22539481411.8186071266986No Hit
CGTGACATGC1436383457.531695773107683No Hit
GGGGGGGGGG499391942.618568296384956No Hit
AAGTGGCGAG29058210.15236711160315541No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)