FastQCFastQC Report
Sat 1 Apr 2023
HWW3NDRX2_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWW3NDRX2_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences944157065
Sequences flagged as poor quality0
Sequence length10
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTACGAAA26201028027.75070904119115No Hit
GTGGATCAAA26126391427.671657998979228No Hit
CTCTAGCGAG21002912822.24514710378193No Hit
GTAACATGCG16192030517.149721270157524No Hit
GGGGGGGGGG250074052.6486488241233466No Hit
CACTAACAAA13120000.138959930358621No Hit
GGGATCAAAA11134980.11793567418785349No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)