FastQCFastQC Report
Sat 7 Dec 2019
HWVLTAFXY_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWVLTAFXY_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202573250
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAATGGGA5210522825.72167253080059No Hit
CCTCATTC5020682124.784526584827958ABI Solid3 Adapter A (100% over 8bp)
AGCATCCG4628288422.84748060269557No Hit
GTGGCAAT3895427219.229721594534322No Hit
GGGGGGGG75239033.7141641356891886No Hit
TAATGGAA2204430.10882137695870506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)