FastQCFastQC Report
Mon 27 Nov 2023
HWVLJBGXT_n01_HW15.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWVLJBGXT_n01_HW15.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16998589
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGA772310.45433771002993245No Hit
GTCGTATGCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGC373980.2200064958332718No Hit
GTATGCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTT285800.168131601981788No Hit
ATGCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGG244140.1436236854717765No Hit
GCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTG239670.14099405544777863No Hit
CCTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAA239220.14072932759301374No Hit
CTGAACCAGACGTACCAACTGGAGGCCCAGTTGGTGCTATGCGTTCGAAA231890.13641720498095458No Hit
CTCCGGTTCCACTCCAGCGATTTCACGTTCTCTTGAACTCTCTCTTCAAA215520.12678699390872972No Hit
CCGCGCTTGTGCTCCGAAGAACACAATCTTTGCATCTCAGTTAGGGAATA207080.12182187592158385No Hit
CCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGC206010.12119241191136511No Hit
CCCGGTTTGTCCCTCTTAACCATTAAATCAGTTCTAGAACCAACAAAAAG201160.11833923392112133No Hit
CAGCTTTGCAACCATACTACCCCCGGAACCGAAAGACTTTCGTTTCCGGA193220.11366825799482534No Hit
CCTCTAAGAAGTTATACGAACCCGAAGATTCGCCAACTATTTAGCAGGCT192810.11342706150492844No Hit
CTAAGAAGTTATACGAACCCGAAGATTCGCCAACTATTTAGCAGGCTAGA188900.11112687058908242No Hit
GGCATAAGCTCTCGTGTTGCCACGAGATAGAGATGCCTCCCGACACCGGG181060.1065147230749564No Hit
GTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTT180010.10589702474717165No Hit
CTGGAAACTTACACCTATACGCCACATTTCGAAGCAGCCAAAGACTGATC177690.10453220558482824No Hit
CGGTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCG172790.10164961338849948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)