FastQCFastQC Report
Thu 5 Apr 2018
HWV57AFXX_n01_ah9624i3h-0318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWV57AFXX_n01_ah9624i3h-0318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7970825
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGGGG29050.012.53909174-75
GTTTCGG38800.012.35533234-35
TGCCGTC29600.012.30598650-51
AGTCACG39350.011.8838628-29
TATGCCG36250.011.86364548-49
CGTATGC35950.011.635797546-47
AGGGGGG23300.010.08600476-77
CCGTCTT41300.08.87671752-53
CCAGTCA55150.08.6070126-27
CTCGTAT39700.08.58326544-45
TCACGTT57350.08.48189530-31
CGGAATC45950.08.4381338-39
ACGTTTC60500.08.27332832-33
ATCTCGT39450.08.22046242-43
GCCGTCT26600.07.862961352-53
CGTTTCG38450.07.57846634-35
GTATGCC34250.07.27311348-49
TTCGGAA71100.07.23815336-37
CGTCTGA68600.07.22775516-17
GTCACGT41300.07.112396230-31
Produced by FastQC (version 0.11.2)