FastQCFastQC Report
Thu 5 Apr 2018
HWV57AFXX_n01_ah7797i0h-0318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWV57AFXX_n01_ah7797i0h-0318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7131772
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC28700.014.32929648-49
CGTATGC34100.012.05984544-45
CGATCTC25700.011.88684938-39
CACGATC26500.011.17329236-37
AAGGGGG28650.011.15577572-73
TATGCCG36500.011.13818246-47
CTCGTAT35950.011.04742-43
AGGGGGG21000.010.40756472-73
ATCACGA37650.010.29846434-35
CCGTCTT42800.09.8282950-51
GCCGTCT29050.09.78831448-49
GTATGCC33050.09.17225844-45
CCAGTCA44500.08.97732526-27
AGTCACA46950.08.95917228-29
CATCACG33450.08.92200832-33
ATCTCGT34050.08.9028240-41
CGTCTGA50450.08.43060416-17
ATGCCGT35850.08.25928546-47
GATCTCG26400.08.10016738-39
GAGCACA73600.08.0460429
Produced by FastQC (version 0.11.2)