FastQCFastQC Report
Thu 5 Apr 2018
HWV57AFXX_n01_ah5184i3h-0318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWV57AFXX_n01_ah5184i3h-0318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8292050
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC32100.013.39700648-49
CGTATGC36200.012.39899544-45
AAGGGGG32300.012.00469172-73
TATGCCG38350.011.94901946-47
AGGGGGG24150.011.19051972-73
CTCGTAT40550.010.43129342-43
AGTCACA55000.09.57065828-29
ATCTCGT43550.09.5508440-41
CCGTCTT45200.09.35824650-51
GCCGTCT30300.09.30679948-49
CCAGTCA57750.09.11485726-27
GTATGCC34600.09.03310944-45
TCACACT59500.08.7678930-31
ACACTTG61450.08.527932-33
GTCACAC42350.07.823879728-29
ATGCCGT40050.07.745231646-47
CTCCAGT74850.07.09529524-25
GAATCTC61350.07.047938-39
AAAGGGG43700.07.044989670-71
CGTCTGA74850.07.001067616-17
Produced by FastQC (version 0.11.2)