FastQCFastQC Report
Thu 5 Apr 2018
HWV57AFXX_n01_ah3988i3h-0318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWV57AFXX_n01_ah3988i3h-0318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7489384
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC27900.012.21370550-51
CGTACGT27500.012.13409634-35
CGTATGC31550.010.94979546-47
AAGGGGG24250.010.85389574-75
TATGCCG32850.010.158848-49
ACCGTAC34200.010.03172532-33
AGGGGGG19000.09.64762374-75
AGTCACC39150.09.00343828-29
CTCGTAT35200.08.8128244-45
CCGTACG23500.08.59962432-33
GCCGTCT27200.08.46721950-51
CCGTCTT42850.08.39106452-53
CCAGTCA42200.08.3529126-27
ATCTCGT39550.08.02138142-43
CGTAATC42200.07.907395438-39
CGTCTGA46000.07.81570216-17
TCACCGT46650.07.757405330-31
CACGTCT47050.07.74114114-15
TACGTAA51150.06.983286436-37
GTATGCC30550.06.92339846-47
Produced by FastQC (version 0.11.2)