Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content HWTNGBGXK_n01_HCT116_sph_rep1_day1 HWTNGBGXK_n01_HCT116_sph_rep1_day1.fastq.gz Conventional base calls Sanger / Illumina 1.9 48152813.0 0.0 76.0 47.0 48.122821806534915 76.0 pass pass warn pass fail pass pass pass fail pass pass HWTNGBGXK_n01_HCT116_sph_rep1_day21 HWTNGBGXK_n01_HCT116_sph_rep1_day21.fastq.gz Conventional base calls Sanger / Illumina 1.9 42556867.0 0.0 76.0 47.0 45.74515317377104 76.0 pass pass warn pass fail pass pass pass fail pass pass HWTNGBGXK_n01_HCT116_sph_rep2_day0 HWTNGBGXK_n01_HCT116_sph_rep2_day0.fastq.gz Conventional base calls Sanger / Illumina 1.9 49342247.0 0.0 76.0 47.0 49.821937312243826 76.0 pass pass warn pass fail pass pass pass fail pass pass HWTNGBGXK_n01_HCT116_sph_rep2_day21 HWTNGBGXK_n01_HCT116_sph_rep2_day21.fastq.gz Conventional base calls Sanger / Illumina 1.9 51384992.0 0.0 76.0 47.0 45.854843391247954 76.0 pass pass warn pass fail pass pass pass fail pass pass HWTNGBGXK_n01_undetermined HWTNGBGXK_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 9456789.0 0.0 76.0 47.0 77.7714129938176 76.0 pass warn warn pass fail warn pass pass pass pass pass