[2024-03-28 01:33:37,100] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-03-28 01:33:37,100] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-03-28 01:33:37,101] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-03-28 01:33:37,103] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-03-28 01:33:37,103] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-03-28 01:33:37,103] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-03-28 01:33:37,133] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-03-28 01:33:37,133] multiqc [INFO ] This is MultiQC v1.9 [2024-03-28 01:33:37,133] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-03-28 01:33:37,133] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/0f/2e06c6382bbeb9335e808d39f277d0/merged [2024-03-28 01:33:37,133] multiqc [INFO ] Template : default [2024-03-28 01:33:37,133] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-03-28 01:33:37,133] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/0f/2e06c6382bbeb9335e808d39f277d0/merged [2024-03-28 01:33:37,134] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-03-28 01:33:37,134] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-44720631/tmpdxism5lz [2024-03-28 01:33:37,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n01_10G_1-17_NEB_fastqc.html [2024-03-28 01:33:37,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n01_10G_1-17_NEB_fastqc.html [2024-03-28 01:33:37,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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01:33:42,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n01_LA_21_fastqc.html [2024-03-28 01:33:42,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n01_LA_21_fastqc.html [2024-03-28 01:33:42,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n01_LA_22_fastqc.html [2024-03-28 01:33:42,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n01_LA_22_fastqc.html [2024-03-28 01:33:42,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n01_LA_23_fastqc.html [2024-03-28 01:33:42,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n01_LA_23_fastqc.html [2024-03-28 01:33:42,790] multiqc [DEBUG ] File ignored by 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[2024-03-28 01:33:46,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_04_fastqc.html [2024-03-28 01:33:46,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_04_fastqc.html [2024-03-28 01:33:46,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_05_fastqc.html [2024-03-28 01:33:46,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_05_fastqc.html [2024-03-28 01:33:46,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_06_fastqc.html [2024-03-28 01:33:46,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_06_fastqc.html [2024-03-28 01:33:46,678] multiqc [DEBUG ] 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exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_10_fastqc.html [2024-03-28 01:33:46,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_10_fastqc.html [2024-03-28 01:33:47,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_11_fastqc.html [2024-03-28 01:33:47,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_11_fastqc.html [2024-03-28 01:33:47,111] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_12_fastqc.html [2024-03-28 01:33:47,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_12_fastqc.html [2024-03-28 01:33:47,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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01:33:47,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_16_fastqc.html [2024-03-28 01:33:47,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_17_fastqc.html [2024-03-28 01:33:47,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_17_fastqc.html [2024-03-28 01:33:47,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_18_fastqc.html [2024-03-28 01:33:47,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AH_18_fastqc.html [2024-03-28 01:33:47,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_1_fastqc.html [2024-03-28 01:33:47,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_1_fastqc.html [2024-03-28 01:33:47,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_2_fastqc.html [2024-03-28 01:33:47,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_2_fastqc.html [2024-03-28 01:33:47,956] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_3_fastqc.html [2024-03-28 01:33:47,964] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_3_fastqc.html [2024-03-28 01:33:48,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_4_fastqc.html [2024-03-28 01:33:48,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_4_fastqc.html [2024-03-28 01:33:48,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_5_fastqc.html [2024-03-28 01:33:48,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_5_fastqc.html [2024-03-28 01:33:48,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_6_fastqc.html [2024-03-28 01:33:48,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_6_fastqc.html [2024-03-28 01:33:48,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_7_fastqc.html [2024-03-28 01:33:48,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_7_fastqc.html [2024-03-28 01:33:48,364] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_8_fastqc.html [2024-03-28 01:33:48,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_AJ_8_fastqc.html [2024-03-28 01:33:48,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_10_fastqc.html [2024-03-28 01:33:48,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_10_fastqc.html [2024-03-28 01:33:48,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_11_fastqc.html [2024-03-28 01:33:48,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_11_fastqc.html [2024-03-28 01:33:48,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_12_fastqc.html [2024-03-28 01:33:48,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_12_fastqc.html [2024-03-28 01:33:48,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_13_fastqc.html [2024-03-28 01:33:48,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_13_fastqc.html [2024-03-28 01:33:48,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_15_fastqc.html [2024-03-28 01:33:48,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_15_fastqc.html [2024-03-28 01:33:48,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_16_fastqc.html [2024-03-28 01:33:48,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_16_fastqc.html [2024-03-28 01:33:48,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_17_fastqc.html [2024-03-28 01:33:48,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_17_fastqc.html [2024-03-28 01:33:49,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_18_fastqc.html [2024-03-28 01:33:49,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_18_fastqc.html [2024-03-28 01:33:49,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_19_fastqc.html [2024-03-28 01:33:49,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_19_fastqc.html [2024-03-28 01:33:49,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_1_fastqc.html [2024-03-28 01:33:49,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_1_fastqc.html [2024-03-28 01:33:49,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_20_fastqc.html [2024-03-28 01:33:49,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_20_fastqc.html [2024-03-28 01:33:49,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_21_fastqc.html [2024-03-28 01:33:49,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_21_fastqc.html [2024-03-28 01:33:49,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_22_fastqc.html [2024-03-28 01:33:49,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_22_fastqc.html [2024-03-28 01:33:49,517] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_23_fastqc.html [2024-03-28 01:33:49,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_23_fastqc.html [2024-03-28 01:33:49,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_24_fastqc.html [2024-03-28 01:33:49,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_24_fastqc.html [2024-03-28 01:33:49,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_25_fastqc.html [2024-03-28 01:33:49,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_25_fastqc.html [2024-03-28 01:33:49,755] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_26_fastqc.html [2024-03-28 01:33:49,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_26_fastqc.html [2024-03-28 01:33:49,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_27_fastqc.html [2024-03-28 01:33:49,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_27_fastqc.html [2024-03-28 01:33:49,907] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_28_fastqc.html [2024-03-28 01:33:49,914] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_28_fastqc.html [2024-03-28 01:33:49,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_29_fastqc.html [2024-03-28 01:33:49,986] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_29_fastqc.html [2024-03-28 01:33:50,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_2_fastqc.html [2024-03-28 01:33:50,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_2_fastqc.html [2024-03-28 01:33:50,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_30_fastqc.html [2024-03-28 01:33:50,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_30_fastqc.html [2024-03-28 01:33:50,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_3_fastqc.html [2024-03-28 01:33:50,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_3_fastqc.html [2024-03-28 01:33:50,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_5_fastqc.html [2024-03-28 01:33:50,284] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_5_fastqc.html [2024-03-28 01:33:50,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_6_fastqc.html [2024-03-28 01:33:50,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_6_fastqc.html [2024-03-28 01:33:50,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_7_fastqc.html [2024-03-28 01:33:50,425] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_7_fastqc.html [2024-03-28 01:33:50,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_8_fastqc.html [2024-03-28 01:33:50,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_LA_8_fastqc.html [2024-03-28 01:33:50,569] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWTKNDRX3_n02_undetermined_fastqc.html [2024-03-28 01:33:50,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWTKNDRX3_n02_undetermined_fastqc.html [2024-03-28 01:33:50,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-03-28 01:33:50,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-03-28 01:33:50,643] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-03-28 01:33:50,643] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-03-28 01:33:50,644] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-03-28 01:33:50,644] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-03-28 01:33:50,644] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-03-28 01:33:50,669] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-03-28 01:33:52,303] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-03-28 01:33:52,306] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-03-28 01:33:52,352] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 80 samples (table) [2024-03-28 01:33:52,354] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-03-28 01:33:52,363] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-03-28 01:33:52,372] multiqc [DEBUG ] No samples found: conpair [2024-03-28 01:33:52,379] multiqc [DEBUG ] No samples found: peddy [2024-03-28 01:33:52,386] multiqc [DEBUG ] No samples found: somalier [2024-03-28 01:33:52,394] multiqc [DEBUG ] No samples found: methylQA [2024-03-28 01:33:52,409] multiqc [DEBUG ] No samples found: mosdepth [2024-03-28 01:33:52,417] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-03-28 01:33:52,422] multiqc [DEBUG ] No samples found: qualimap [2024-03-28 01:33:52,429] multiqc [DEBUG ] No samples found: preseq [2024-03-28 01:33:52,437] multiqc [DEBUG ] No samples found: quast [2024-03-28 01:33:52,445] multiqc [DEBUG ] No samples found: qorts [2024-03-28 01:33:52,453] multiqc [DEBUG ] No samples found: rna_seqc [2024-03-28 01:33:52,461] multiqc [DEBUG ] No samples found: rockhopper [2024-03-28 01:33:52,469] multiqc [DEBUG ] No samples found: rsem [2024-03-28 01:33:52,492] multiqc [DEBUG ] No samples found: rseqc [2024-03-28 01:33:52,501] multiqc [DEBUG ] No samples found: busco [2024-03-28 01:33:52,510] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-03-28 01:33:52,516] multiqc [DEBUG ] No samples found: disambiguate [2024-03-28 01:33:52,524] multiqc [DEBUG ] No samples found: supernova [2024-03-28 01:33:52,546] multiqc [DEBUG ] No samples found: deeptools [2024-03-28 01:33:52,554] multiqc [DEBUG ] No samples found: sargasso [2024-03-28 01:33:52,563] multiqc [DEBUG ] No samples found: verifybamid [2024-03-28 01:33:52,570] multiqc [DEBUG ] No samples found: mirtrace [2024-03-28 01:33:52,577] multiqc [DEBUG ] No samples found: happy [2024-03-28 01:33:52,585] multiqc [DEBUG ] No samples found: mirtop [2024-03-28 01:33:52,597] multiqc [DEBUG ] No samples found: homer [2024-03-28 01:33:52,606] multiqc [DEBUG ] No samples found: macs2 [2024-03-28 01:33:52,613] multiqc [DEBUG ] No samples found: theta2 [2024-03-28 01:33:52,622] multiqc [DEBUG ] No samples found: snpeff [2024-03-28 01:33:52,634] multiqc [DEBUG ] No samples found: gatk [2024-03-28 01:33:52,642] multiqc [DEBUG ] No samples found: htseq [2024-03-28 01:33:52,651] multiqc [DEBUG ] No samples found: bcftools [2024-03-28 01:33:52,660] multiqc [DEBUG ] No samples found: featureCounts [2024-03-28 01:33:52,670] multiqc [DEBUG ] No samples found: fgbio [2024-03-28 01:33:52,694] multiqc [DEBUG ] No samples found: dragen [2024-03-28 01:33:52,704] multiqc [DEBUG ] No samples found: dedup [2024-03-28 01:33:52,712] multiqc [DEBUG ] No samples found: damageprofiler [2024-03-28 01:33:52,760] multiqc [DEBUG ] No samples found: biobambam2 [2024-03-28 01:33:52,770] multiqc [DEBUG ] No samples found: mtnucratio [2024-03-28 01:33:52,773] multiqc [DEBUG ] No samples found: picard [2024-03-28 01:33:52,783] multiqc [DEBUG ] No samples found: prokka [2024-03-28 01:33:52,790] multiqc [DEBUG ] No samples found: samblaster [2024-03-28 01:33:52,805] multiqc [DEBUG ] No samples found: samtools [2024-03-28 01:33:52,814] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-03-28 01:33:52,824] multiqc [DEBUG ] No samples found: bamtools [2024-03-28 01:33:52,831] multiqc [DEBUG ] No samples found: jellyfish [2024-03-28 01:33:52,845] multiqc [DEBUG ] No samples found: vcftools [2024-03-28 01:33:52,853] multiqc [DEBUG ] No samples found: longranger [2024-03-28 01:33:52,861] multiqc [DEBUG ] No samples found: stacks [2024-03-28 01:33:52,869] multiqc [DEBUG ] No samples found: varscan2 [2024-03-28 01:33:52,893] multiqc [DEBUG ] No samples found: bbmap [2024-03-28 01:33:52,903] multiqc [DEBUG ] No samples found: bismark [2024-03-28 01:33:52,912] multiqc [DEBUG ] No samples found: biscuit [2024-03-28 01:33:52,919] multiqc [DEBUG ] No samples found: hicexplorer [2024-03-28 01:33:52,927] multiqc [DEBUG ] No samples found: hicup [2024-03-28 01:33:52,935] multiqc [DEBUG ] No samples found: hicpro [2024-03-28 01:33:52,942] multiqc [DEBUG ] No samples found: salmon [2024-03-28 01:33:52,950] multiqc [DEBUG ] No samples found: kallisto [2024-03-28 01:33:52,958] multiqc [DEBUG ] No samples found: slamdunk [2024-03-28 01:33:52,965] multiqc [DEBUG ] No samples found: star [2024-03-28 01:33:52,972] multiqc [DEBUG ] No samples found: hisat2 [2024-03-28 01:33:52,980] multiqc [DEBUG ] No samples found: tophat [2024-03-28 01:33:52,987] multiqc [DEBUG ] No samples found: bowtie2 [2024-03-28 01:33:52,993] multiqc [DEBUG ] No samples found: bowtie1 [2024-03-28 01:33:53,001] multiqc [DEBUG ] No samples found: snpsplit [2024-03-28 01:33:53,008] multiqc [DEBUG ] No samples found: kat [2024-03-28 01:33:53,015] multiqc [DEBUG ] No samples found: leehom [2024-03-28 01:33:53,023] multiqc [DEBUG ] No samples found: adapterRemoval [2024-03-28 01:33:53,031] multiqc [DEBUG ] No samples found: clipandmerge [2024-03-28 01:33:53,038] multiqc [DEBUG ] No samples found: cutadapt [2024-03-28 01:33:53,046] multiqc [DEBUG ] No samples found: flexbar [2024-03-28 01:33:53,054] multiqc [DEBUG ] No samples found: kaiju [2024-03-28 01:33:53,062] multiqc [DEBUG ] No samples found: kraken [2024-03-28 01:33:53,069] multiqc [DEBUG ] No samples found: malt [2024-03-28 01:33:53,077] multiqc [DEBUG ] No samples found: trimmomatic [2024-03-28 01:33:53,085] multiqc [DEBUG ] No samples found: sickle [2024-03-28 01:33:53,092] multiqc [DEBUG ] No samples found: skewer [2024-03-28 01:33:53,099] multiqc [DEBUG ] No samples found: sortmerna [2024-03-28 01:33:53,106] multiqc [DEBUG ] No samples found: biobloomtools [2024-03-28 01:33:53,113] multiqc [DEBUG ] No samples found: fastq_screen [2024-03-28 01:33:53,121] multiqc [DEBUG ] No samples found: afterqc [2024-03-28 01:33:53,128] multiqc [DEBUG ] No samples found: fastp [2024-03-28 01:34:04,019] multiqc.modules.fastqc.fastqc [INFO ] Found 160 reports [2024-03-28 01:34:19,645] multiqc [DEBUG ] No samples found: pycoqc [2024-03-28 01:34:19,653] multiqc [DEBUG ] No samples found: minionqc [2024-03-28 01:34:19,660] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-03-28 01:34:19,668] multiqc [DEBUG ] No samples found: clusterflow [2024-03-28 01:34:19,675] multiqc [DEBUG ] No samples found: bcl2fastq [2024-03-28 01:34:19,684] multiqc [DEBUG ] No samples found: interop [2024-03-28 01:34:19,691] multiqc [DEBUG ] No samples found: ivar [2024-03-28 01:34:19,699] multiqc [DEBUG ] No samples found: flash [2024-03-28 01:34:19,706] multiqc [DEBUG ] No samples found: seqyclean [2024-03-28 01:34:19,706] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-03-28 01:34:19,706] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-03-28 01:34:19,706] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-03-28 01:34:19,706] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-03-28 01:34:19,706] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-03-28 01:34:19,706] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-03-28 01:34:19,707] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-03-28 01:34:19,887] multiqc [INFO ] Compressing plot data [2024-03-28 01:34:19,972] multiqc [INFO ] Report : multiqc_report.html [2024-03-28 01:34:19,972] multiqc [INFO ] Data : multiqc_data [2024-03-28 01:34:19,972] multiqc [DEBUG ] Moving data file from '/state/partition1/job-44720631/tmpdxism5lz/multiqc_data' to '/vast/gencore/GENEFLOW/work/0f/2e06c6382bbeb9335e808d39f277d0/merged/multiqc_data' [2024-03-28 01:34:20,296] multiqc [INFO ] MultiQC complete