FastQCFastQC Report
Thu 28 Mar 2024
HWTKNDRX3_n02_LA_24.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWTKNDRX3_n02_LA_24.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42802887
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACT1477220.345121580233595No Hit
GTTAGTTTTACCCTACTGATGCCCGCGTCGCGATAGTAATTCAACCTAGT650900.152069181688609No Hit
CTTGTCCGTACCAGTTCTGAGCTGACTGTTCGACGCCCGGGGAAAGCTCC620730.14502059171849788No Hit
CGAATGGGGAGCCCACAGGCCGACGCCCGGAGCACGCTGATGCCGAGGCA544500.1272110453671034No Hit
AAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAG542750.12680219444076282No Hit
CTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCT513720.120019941645525No Hit
CCCGTATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCC488210.11406006328498355No Hit
ATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCG484950.1132984324164863No Hit
CCAGTTCTGAGCTGACTGTTCGACGCCCGGGGAAAGCTCCCGAGAGAGCC479380.11199711832521951No Hit
CTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCG474530.11086401718650428No Hit
CCCAGCTTGAAAATCGGACGTCTTCGGCGTTCGAATTGTAGTCTGGAGAA473120.11053460015442416No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA465200.1086842576763572No Hit
CTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGTAAGGCGCAAGGAA460470.10757919202973387No Hit
CTAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTATACCCGGCCGT456440.10663766675364679No Hit
CGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTG443570.10363086022678798No Hit
GGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAA433190.10120579016083658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)