FastQCFastQC Report
Thu 28 Mar 2024
HWTKNDRX3_n01_LA_7.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWTKNDRX3_n01_LA_7.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28413840
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCTAAGATCTCGTAT3322771.1694195504725866TruSeq Adapter, Index 18 (97% over 37bp)
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA624880.2199209962468994No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG543040.19111813116424953No Hit
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC536380.1887742029940339No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCTAAGATCGCGTAT477350.16799911592378924TruSeq Adapter, Index 18 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCTAAGATCTCGTA445150.15666661035607998TruSeq Adapter, Index 18 (97% over 37bp)
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAG308690.10864071874832827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)