FastQCFastQC Report
Thu 28 Mar 2024
HWTKNDRX3_n01_LA_6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWTKNDRX3_n01_LA_6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24344136
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATTGCATCTCGTAT2801191.1506631412180741TruSeq Adapter, Index 22 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATTGCATCGCGTAT605770.2488361057463695TruSeq Adapter, Index 22 (97% over 37bp)
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA556610.22864233094984351No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG467800.19216126626962649No Hit
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC452600.18591746283376004No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATTGCATCTCGTA384760.1580503822357877TruSeq Adapter, Index 22 (97% over 37bp)
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAAT260830.10714284540638452No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAG250710.10298578680303133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)