FastQCFastQC Report
Thu 28 Mar 2024
HWTKNDRX3_n01_LA_12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWTKNDRX3_n01_LA_12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83034542
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCTTAACATCTCGTAT9694981.1675839676456576TruSeq Adapter, Index 11 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2601910.31335272494186817No Hit
CGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACT2228240.2683509713343153No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCTTAACATCGCGTAT1805440.2174324030112673TruSeq Adapter, Index 11 (97% over 37bp)
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA1580200.1903063426302755No Hit
CGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTG1052600.12676652085345397No Hit
CGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA898070.10815619359952633No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGA890090.10719514777356152No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTATA857640.1032871356115868No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCTTAACATCTCGTA851380.10253323249497781TruSeq Adapter, Index 11 (97% over 37bp)
GTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCG847350.1020478923096848No Hit
CGAATGGGGAGCCCACAGGCCGACGCCCGGAGCACGCTGATGCCGAGGCA831930.10019083383394829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)