FastQCFastQC Report
Thu 28 Mar 2024
HWTKNDRX3_n01_LA_11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWTKNDRX3_n01_LA_11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24579251
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACACAGATCTCGTAT3111001.2657017091367022TruSeq Adapter, Index 23 (97% over 37bp)
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA478520.19468453290134838No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACACAGATCGCGTAT468720.1906974301210399TruSeq Adapter, Index 23 (97% over 37bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC433600.17640895566752623No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG411250.16731592024508804No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAG257430.10473468048314409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)