FastQCFastQC Report
Wed 28 Aug 2024
HWTCTDMXY_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWTCTDMXY_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490481388
Sequences flagged as poor quality0
Sequence length26
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACGACGCTCTTCCGATCTACACGA21677560.4419649864471514No Hit
ACACTCTTTCCCTACACGACGCTCTT16706370.3406117012537895Illumina Single End PCR Primer 1 (100% over 26bp)
CAAAAAAAAAAAAAAAAAAAAAAAAA9576850.19525409596174115No Hit
GCCAAATAAAAAAAAAAAAAAAAAAA7054730.1438327767902989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)