HWNG7BGX3_n01_ox1060_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWNG7BGX3_n01_ox1060_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6702275
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	20880	0.3115360082956906	TruSeq Adapter, Index 11 (100% over 63bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	7017	0.1046957935924742	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	3040	53.225513	44
TATGCCG	3110	51.916584	46
GTATGCC	3295	49.42051	45
ATGCCGT	3480	46.693787	47
TCGTATG	3475	46.662037	43
AGTCACG	3945	41.452618	28
CTCGTAT	3870	41.097046	42
ACGGCTA	3980	41.001095	32
CGGCTAC	3990	40.725407	33
GCCGTCT	4065	40.313496	49
GGCTACA	4050	40.03688	34
GCACACG	4390	38.822464	11
TGCCGTC	4280	38.449615	48
GTCACGG	4315	38.137745	29
ACGTCTG	4565	38.01409	15
CACGGCT	4305	37.90634	31
GCTACAT	4255	37.783356	35
CACACGT	4590	37.13113	12
CATCTCG	4315	36.698586	39
ACACGTC	4670	36.5692	13