HWNG7BGX3_n01_ox10240_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWNG7BGX3_n01_ox10240_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9860945
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGGCGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	42594	0.43194643109762804	RNA PCR Primer, Index 33 (100% over 43bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	5705	56.42061	46
CGTATGC	5730	56.234653	44
CCAGGCG	5975	53.699745	33
GTATGCC	6180	52.19572	45
ATGCCGT	6325	50.999146	47
TCGTATG	6455	50.07894	43
CAGGCGA	6430	49.739124	34
CTCGTAT	6670	46.757835	42
ACCAGGC	7045	45.690475	32
GGCGATC	6730	45.67526	36
AGGCGAT	6920	45.568077	35
GCGATCT	7010	43.850853	37
TGCCGTC	7480	43.354885	48
GCCGTCT	7615	42.405064	49
GCACACG	7800	42.018734	11
TCTCGTA	7375	41.914085	41
CACACGT	8030	40.858795	12
ACGTCTG	8040	40.593216	15
ACACGTC	8180	40.0252	13
CACGTCT	8620	38.062004	14