HWNG7BGX3_n01_kcl_control_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWNG7BGX3_n01_kcl_control_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8590879
Sequences flagged as poor quality	0
Sequence length	75
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCATTCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	15435	0.1796672959775129	RNA PCR Primer, Index 45 (100% over 43bp)
CTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGTAAGGCGCAAGGAAGCTGATTGGCGGGATCCCTCGCGGG	10529	0.1225602176447835	No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTATAAGCAACATCCGCTGATCCCTGGTCG	10324	0.12017396590034617	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	9670	0.1125612408229705	No Hit
CGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGC	9226	0.1073929687520916	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	2385	49.759956	44
TATGCCG	2485	48.17403	46
GTATGCC	2700	44.976826	45
TCGTATG	2725	43.67797	43
ATGCCGT	2830	42.54504	47
CTCGTAT	2875	40.559143	42
GTGTGCG	2420	35.213093	8
CATCTCG	3505	33.76125	39
GCCGTCT	3640	32.98282	49
GCACACG	3755	32.800716	11
ACGTCTG	3810	32.327404	15
CACACGT	3955	31.142384	12
CACGTCT	4220	29.431854	14
AGTCACT	4280	28.777431	28
CACTCAT	4230	28.70945	31
CTGACAT	3425	28.206738	1
TCTCGTA	4215	28.156153	41
TGTGTGC	3110	27.84427	7
GTCACTC	4445	27.55397	29
CAGTCAC	4535	27.539518	27