FastQCFastQC Report
Wed 5 Jan 2022
HWN2LBGXK_n02_AA32__.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWN2LBGXK_n02_AA32__.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5034717
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTATACACAT753291.4961913450150226No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTATACACATCTGACG605711.2030666271808326No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTAT540351.07324800976897No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC503290.9996391058325622No Hit
GCCTAAGCCTAAGCCTAAGCCCTGTCTCTTATACACATCTGACGCTGCCG309680.6150891897200974No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTC287210.5704590744623779No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTATACACATCTGACG278990.5541324368380586No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTAT233920.4646139991582446No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG229610.45605343855473907No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTATACACAT151140.30019562172014835No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG119650.23764990167272562No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTC76340.15162719175675615No Hit
GGCTTAGGCTTAGGCTTAGGCCTGTCTCTTATACACATCTGACGCTGCCG53320.10590466157283517No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)